Detailed information of SNP:
|
SNP ID:
sf1217730502(Gbrowse)
Chromosome: chr12 Position: 17730502 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 95.33% | 4.67% |
| All Indica | 792 | 98.48% | 1.52% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217730502 | T->A | LOC_Os12g29710(LOC_Os12g29710.1) | Synonymous |