Detailed information of SNP:
|
SNP ID:
sf1217747450(Gbrowse)
Chromosome: chr12 Position: 17747450 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 62.58% | 37.42% |
| All Indica | 778 | 57.84% | 42.16% |
| All Japonica | 495 | 70.71% | 29.29% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 368 | 45.65% | 54.35% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 201 | 50.25% | 49.75% |
| Temperate Japonica | 335 | 72.84% | 27.16% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217747450 | A->T | LOC_Os12g29730(LOC_Os12g29730.1) | Non-Synonymous SNP |