Detailed information of SNP:
|
SNP ID:
sf1217765759(Gbrowse)
Chromosome: chr12 Position: 17765759 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.20% | 33.80% |
| All Indica | 797 | 59.47% | 40.53% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 51.20% | 48.80% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217765759 | A->G | INTERGENIC | None |