Detailed information of SNP:
|
SNP ID:
sf1217767401(Gbrowse)
Chromosome: chr12 Position: 17767401 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 67.62% | 32.38% |
| All Indica | 785 | 61.78% | 38.22% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 369 | 52.30% | 47.70% |
| Indica II | 210 | 76.19% | 23.81% |
| Indica Intermediate | 206 | 64.08% | 35.92% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217767401 | C->T | INTERGENIC | None |