Detailed information of SNP:
|
SNP ID:
sf1217769713(Gbrowse)
Chromosome: chr12 Position: 17769713 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.35% | 32.65% |
| All Indica | 795 | 61.51% | 38.49% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 374 | 51.87% | 48.13% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 209 | 64.11% | 35.89% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217769713 | G->C | INTERGENIC | None |