Detailed information of SNP:
|
SNP ID:
sf1217775433(Gbrowse)
Chromosome: chr12 Position: 17775433 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 53.94% | 46.06% |
| All Indica | 787 | 49.30% | 50.70% |
| All Japonica | 493 | 64.91% | 35.09% |
| Aus | 60 | 43.33% | 56.67% |
| Indica I | 374 | 43.85% | 56.15% |
| Indica II | 202 | 69.80% | 30.20% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 71.34% | 28.66% |
| Tropical Japonica | 92 | 41.30% | 58.70% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217775433 | A->G | INTERGENIC | None |