Detailed information of SNP:
|
SNP ID:
sf1217780266(Gbrowse)
Chromosome: chr12 Position: 17780266 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 96.71% | 3.29% |
| All Indica | 779 | 94.99% | 5.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 200 | 92.00% | 8.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217780266 | C->T | INTERGENIC | None |