Detailed information of SNP:



SNP ID: sf1217781149(Gbrowse)

Chromosome: chr12

Position: 17781149
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 87.17% 12.83%
All Indica798 77.82% 22.18%
All Japonica497 99.80% 0.20%
Aus67 98.51% 1.49%
Indica I375 65.33% 34.67%
Indica II212 91.98% 8.02%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1217781149 G->A INTERGENIC None