Detailed information of SNP:
|
SNP ID:
sf1217782125(Gbrowse)
Chromosome: chr12 Position: 17782125 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 52.89% | 47.11% |
| All Indica | 773 | 57.18% | 42.82% |
| All Japonica | 493 | 40.37% | 59.63% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 369 | 57.45% | 42.55% |
| Indica II | 201 | 45.77% | 54.23% |
| Indica Intermediate | 203 | 67.98% | 32.02% |
| Temperate Japonica | 334 | 31.44% | 68.56% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217782125 | T->C | LOC_Os12g29800(LOC_Os12g29800.1) | Non-Synonymous SNP |