Detailed information of SNP:
|
SNP ID:
sf1217783162(Gbrowse)
Chromosome: chr12 Position: 17783162 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 97.15% | 2.85% |
| All Indica | 789 | 95.94% | 4.06% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217783162 | G->T | LOC_Os12g29800(LOC_Os12g29800.1) | INTRON |