Detailed information of SNP:
|
SNP ID:
sf1217783571(Gbrowse)
Chromosome: chr12 Position: 17783571 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 91.81% | 8.19% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217783571 | G->A | LOC_Os12g29800(LOC_Os12g29800.1) | Synonymous |