Detailed information of SNP:
|
SNP ID:
sf1217795566(Gbrowse)
Chromosome: chr12 Position: 17795566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 79.46% | 20.54% |
| All Indica | 754 | 71.22% | 28.78% |
| All Japonica | 460 | 89.57% | 10.43% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 353 | 61.47% | 38.53% |
| Indica II | 193 | 79.27% | 20.73% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 327 | 88.69% | 11.31% |
| Tropical Japonica | 79 | 94.94% | 5.06% |
| Japonica Intermediate | 54 | 87.04% | 12.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217795566 | C->T | INTERGENIC | None |