Detailed information of SNP:
|
SNP ID:
sf1217807196(Gbrowse)
Chromosome: chr12 Position: 17807196 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 97.95% | 2.05% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 494 | 94.94% | 5.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217807196 | T->A | INTERGENIC | None |