Detailed information of SNP:
|
SNP ID:
sf1217823850(Gbrowse)
Chromosome: chr12 Position: 17823850 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 89.99% | 10.01% |
| All Indica | 799 | 84.11% | 15.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217823850 | T->C | INTERGENIC | None |