Detailed information of SNP:
|
SNP ID:
sf1217825652(Gbrowse)
Chromosome: chr12 Position: 17825652 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 91.99% | 8.01% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217825652 | T->C | INTERGENIC | None |