Detailed information of SNP:
|
SNP ID:
sf1217827767(Gbrowse)
Chromosome: chr12 Position: 17827767 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 62.67% | 37.33% |
| All Indica | 723 | 74.00% | 26.00% |
| All Japonica | 489 | 42.33% | 57.67% |
| Aus | 61 | 78.69% | 21.31% |
| Indica I | 345 | 79.13% | 20.87% |
| Indica II | 184 | 60.87% | 39.13% |
| Indica Intermediate | 194 | 77.32% | 22.68% |
| Temperate Japonica | 333 | 30.33% | 69.67% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217827767 | T->C | LOC_Os12g29860(LOC_Os12g29860.1) | Non-Synonymous SNP |