Detailed information of SNP:
|
SNP ID:
sf1217828785(Gbrowse)
Chromosome: chr12 Position: 17828785 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 70.27% | 29.73% |
| All Indica | 781 | 84.51% | 15.49% |
| All Japonica | 491 | 46.23% | 53.77% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 200 | 68.00% | 32.00% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 334 | 34.43% | 65.57% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217828785 | T->C | LOC_Os12g29860(LOC_Os12g29860.1) | Non-Synonymous SNP |