Detailed information of SNP:
|
SNP ID:
sf1217832397(Gbrowse)
Chromosome: chr12 Position: 17832397 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 92.93% | 7.07% |
| All Indica | 795 | 88.81% | 11.19% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217832397 | C->T | LOC_Os12g29860(LOC_Os12g29860.1) | INTRON |