Detailed information of SNP:
|
SNP ID:
sf1217833649(Gbrowse)
Chromosome: chr12 Position: 17833649 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 92.29% | 7.71% |
| All Indica | 783 | 87.61% | 12.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 367 | 92.37% | 7.63% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217833649 | T->C | INTERGENIC | None |