Detailed information of SNP:
|
SNP ID:
sf1217834472(Gbrowse)
Chromosome: chr12 Position: 17834472 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 95.31% | 4.69% |
| All Indica | 739 | 94.99% | 5.01% |
| All Japonica | 488 | 96.52% | 3.48% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 337 | 96.74% | 3.26% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 195 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 83.72% | 16.28% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 34 | 94.12% | 5.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217834472 | C->T | INTERGENIC | None |