Detailed information of SNP:
|
SNP ID:
sf1217835031(Gbrowse)
Chromosome: chr12 Position: 17835031 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 95.12% | 4.88% |
| All Indica | 733 | 91.27% | 8.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 329 | 84.80% | 15.20% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 193 | 97.41% | 2.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217835031 | C->T | INTERGENIC | None |