Detailed information of SNP:
|
SNP ID:
sf1217850498(Gbrowse)
Chromosome: chr12 Position: 17850498 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 88.61% | 11.39% |
| All Indica | 783 | 95.27% | 4.73% |
| All Japonica | 477 | 77.57% | 22.43% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 365 | 95.34% | 4.66% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 325 | 76.62% | 23.38% |
| Tropical Japonica | 86 | 74.42% | 25.58% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 10 | 50.00% | 50.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217850498 | G->A | LOC_Os12g29910(LOC_Os12g29910.1) | Non-Synonymous SNP |