Detailed information of SNP:
|
SNP ID:
sf1217855552(Gbrowse)
Chromosome: chr12 Position: 17855552 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 80.99% | 19.01% |
| All Indica | 766 | 97.26% | 2.74% |
| All Japonica | 489 | 51.74% | 48.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 190 | 94.74% | 5.26% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 333 | 36.04% | 63.96% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217855552 | A->G | LOC_Os12g29920(LOC_Os12g29920.1) | INTRON |