Detailed information of SNP:
|
SNP ID:
sf1217856417(Gbrowse)
Chromosome: chr12 Position: 17856417 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 90.72% | 9.28% |
| All Indica | 753 | 94.82% | 5.18% |
| All Japonica | 433 | 84.53% | 15.47% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 362 | 95.30% | 4.70% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 181 | 88.40% | 11.60% |
| Temperate Japonica | 280 | 89.64% | 10.36% |
| Tropical Japonica | 88 | 68.18% | 31.82% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217856417 | A->T | INTERGENIC | None |