Detailed information of SNP:
|
SNP ID:
sf1217860770(Gbrowse)
Chromosome: chr12 Position: 17860770 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 97.99% | 2.01% |
| All Indica | 790 | 98.73% | 1.27% |
| All Japonica | 480 | 97.08% | 2.92% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 323 | 98.45% | 1.55% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217860770 | T->A | LOC_Os12g29930(LOC_Os12g29930.1) | Non-Synonymous SNP |