Detailed information of SNP:
|
SNP ID:
sf1217867875(Gbrowse)
Chromosome: chr12 Position: 17867875 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 81.46% | 18.54% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 491 | 90.63% | 9.37% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217867875 | C->T | INTERGENIC | None |