Detailed information of SNP:
|
SNP ID:
sf1217868192(Gbrowse)
Chromosome: chr12 Position: 17868192 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 69.19% | 30.81% |
| All Indica | 796 | 56.16% | 43.84% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 30.83% | 69.17% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217868192 | G->A | INTERGENIC | None |