Detailed information of SNP:
|
SNP ID:
sf1217868256(Gbrowse)
Chromosome: chr12 Position: 17868256 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 63.31% | 36.69% |
| All Indica | 794 | 51.01% | 48.99% |
| All Japonica | 495 | 84.44% | 15.56% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 210 | 33.81% | 66.19% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217868256 | G->A | INTERGENIC | None |