Detailed information of SNP:
SNP ID:
sf1217868256(Gbrowse)
Chromosome: chr12 Position: 17868256 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1412 | 63.31% | 36.69% |
All Indica | 794 | 51.01% | 48.99% |
All Japonica | 495 | 84.44% | 15.56% |
Aus | 67 | 46.27% | 53.73% |
Indica I | 375 | 55.20% | 44.80% |
Indica II | 210 | 33.81% | 66.19% |
Indica Intermediate | 209 | 60.77% | 39.23% |
Temperate Japonica | 335 | 97.61% | 2.39% |
Tropical Japonica | 92 | 45.65% | 54.35% |
Japonica Intermediate | 68 | 72.06% | 27.94% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1217868256 | G->A | INTERGENIC | None |