Detailed information of SNP:
|
SNP ID:
sf1217868539(Gbrowse)
Chromosome: chr12 Position: 17868539 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 62.84% | 37.16% |
| All Indica | 794 | 49.50% | 50.50% |
| All Japonica | 494 | 85.63% | 14.37% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 210 | 29.05% | 70.95% |
| Indica Intermediate | 209 | 51.67% | 48.33% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 92 | 46.74% | 53.26% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217868539 | T->C | INTERGENIC | None |