Detailed information of SNP:
|
SNP ID:
sf1217868676(Gbrowse)
Chromosome: chr12 Position: 17868676 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 95.20% | 4.80% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217868676 | G->A | INTERGENIC | None |