Detailed information of SNP:
|
SNP ID:
sf1217871901(Gbrowse)
Chromosome: chr12 Position: 17871901 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1324 | 69.71% | 30.29% |
| All Indica | 705 | 54.18% | 45.82% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 370 | 53.51% | 46.49% |
| Indica II | 154 | 47.40% | 52.60% |
| Indica Intermediate | 181 | 61.33% | 38.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217871901 | G->C | INTERGENIC | None |