Detailed information of SNP:
|
SNP ID:
sf1217886521(Gbrowse)
Chromosome: chr12 Position: 17886521 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 77.28% | 22.72% |
| All Indica | 796 | 74.75% | 25.25% |
| All Japonica | 494 | 83.81% | 16.19% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 91 | 43.96% | 56.04% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217886521 | G->A | INTERGENIC | None |