Detailed information of SNP:
|
SNP ID:
sf1217895069(Gbrowse)
Chromosome: chr12 Position: 17895069 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.78% | 15.22% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 63.20% | 36.80% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217895069 | G->A | INTERGENIC | None |