Detailed information of SNP:
|
SNP ID:
sf1217896112(Gbrowse)
Chromosome: chr12 Position: 17896112 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 70.46% | 29.54% |
| All Indica | 796 | 85.43% | 14.57% |
| All Japonica | 496 | 42.74% | 57.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 27.46% | 72.54% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217896112 | C->G | LOC_Os12g29990(LOC_Os12g29990.4) | UTR_3_PRIME |
| sf1217896112 | C->G | LOC_Os12g29990(LOC_Os12g29990.1) | UTR_3_PRIME |
| sf1217896112 | C->G | LOC_Os12g29990(LOC_Os12g29990.2) | UTR_3_PRIME |