Detailed information of SNP:
|
SNP ID:
sf1217896715(Gbrowse)
Chromosome: chr12 Position: 17896715 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.79% | 6.21% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 494 | 83.20% | 16.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 90.06% | 9.94% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217896715 | C->A | LOC_Os12g29990(LOC_Os12g29990.4) | INTRON |
| sf1217896715 | C->A | LOC_Os12g29990(LOC_Os12g29990.1) | INTRON |
| sf1217896715 | C->A | LOC_Os12g29990(LOC_Os12g29990.2) | INTRON |