Detailed information of SNP:
|
SNP ID:
sf1217899768(Gbrowse)
Chromosome: chr12 Position: 17899768 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 95.84% | 4.16% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217899768 | G->A | LOC_Os12g29990(LOC_Os12g29990.4) | INTRON |
| sf1217899768 | G->A | LOC_Os12g29990(LOC_Os12g29990.1) | INTRON |
| sf1217899768 | G->A | LOC_Os12g29990(LOC_Os12g29990.2) | INTRON |