Detailed information of SNP:
|
SNP ID:
sf1217901328(Gbrowse)
Chromosome: chr12 Position: 17901328 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.00% | 39.00% |
| All Indica | 799 | 73.59% | 26.41% |
| All Japonica | 496 | 40.32% | 59.68% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 61.07% | 38.93% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 25.37% | 74.63% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217901328 | T->C | LOC_Os12g29990(LOC_Os12g29990.4) | INTRON |
| sf1217901328 | T->C | LOC_Os12g29990(LOC_Os12g29990.1) | INTRON |
| sf1217901328 | T->C | LOC_Os12g29990(LOC_Os12g29990.2) | INTRON |