Detailed information of SNP:
|
SNP ID:
sf1217908202(Gbrowse)
Chromosome: chr12 Position: 17908202 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.77% | 15.23% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217908202 | G->A | INTERGENIC | None |