Detailed information of SNP:
|
SNP ID:
sf1217909061(Gbrowse)
Chromosome: chr12 Position: 17909061 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 96.11% | 3.89% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 494 | 96.76% | 3.24% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217909061 | C->T | INTERGENIC | None |