Detailed information of SNP:
|
SNP ID:
sf1217914504(Gbrowse)
Chromosome: chr12 Position: 17914504 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 87.75% | 12.25% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 492 | 87.20% | 12.80% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 54.95% | 45.05% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217914504 | T->C | INTERGENIC | None |