Detailed information of SNP:
|
SNP ID:
sf1217916700(Gbrowse)
Chromosome: chr12 Position: 17916700 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 95.05% | 4.95% |
| All Indica | 795 | 98.74% | 1.26% |
| All Japonica | 479 | 90.81% | 9.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 327 | 92.66% | 7.34% |
| Tropical Japonica | 88 | 82.95% | 17.05% |
| Japonica Intermediate | 64 | 92.19% | 7.81% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217916700 | C->A | INTERGENIC | None |