Detailed information of SNP:
|
SNP ID:
sf1217920096(Gbrowse)
Chromosome: chr12 Position: 17920096 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.87% | 45.13% |
| All Indica | 799 | 36.42% | 63.58% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 6.13% | 93.87% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217920096 | G->A | INTERGENIC | None |