Detailed information of SNP:
|
SNP ID:
sf1217921036(Gbrowse)
Chromosome: chr12 Position: 17921036 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 74.27% | 25.73% |
| All Indica | 790 | 62.15% | 37.85% |
| All Japonica | 491 | 93.89% | 6.11% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 207 | 38.16% | 61.84% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 330 | 98.48% | 1.52% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217921036 | T->C | INTERGENIC | None |