Detailed information of SNP:
|
SNP ID:
sf1217921057(Gbrowse)
Chromosome: chr12 Position: 17921057 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 78.31% | 21.69% |
| All Indica | 789 | 72.37% | 27.63% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 204 | 34.80% | 65.20% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217921057 | T->C | INTERGENIC | None |