Detailed information of SNP:
|
SNP ID:
sf1217921705(Gbrowse)
Chromosome: chr12 Position: 17921705 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.53% | 14.47% |
| All Indica | 797 | 82.06% | 17.94% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 73.80% | 26.20% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217921705 | C->T | INTERGENIC | None |