Detailed information of SNP:
|
SNP ID:
sf1217922172(Gbrowse)
Chromosome: chr12 Position: 17922172 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 77.99% | 22.01% |
| All Indica | 795 | 69.06% | 30.94% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 371 | 50.13% | 49.87% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217922172 | A->G | INTERGENIC | None |