Detailed information of SNP:
|
SNP ID:
sf1217926124(Gbrowse)
Chromosome: chr12 Position: 17926124 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 63.82% | 36.18% |
| All Indica | 798 | 70.93% | 29.07% |
| All Japonica | 497 | 45.88% | 54.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 31.64% | 68.36% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217926124 | A->C | INTERGENIC | None |