Detailed information of SNP:
|
SNP ID:
sf1217926723(Gbrowse)
Chromosome: chr12 Position: 17926723 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 97.62% | 2.38% |
| All Indica | 772 | 98.70% | 1.30% |
| All Japonica | 492 | 95.93% | 4.07% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 364 | 99.45% | 0.55% |
| Indica II | 204 | 99.51% | 0.49% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 330 | 94.85% | 5.15% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217926723 | G->A | INTERGENIC | None |