Detailed information of SNP:
|
SNP ID:
sf1217928135(Gbrowse)
Chromosome: chr12 Position: 17928135 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 51.71% | 48.29% |
| All Indica | 786 | 48.47% | 51.53% |
| All Japonica | 497 | 62.78% | 37.22% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 367 | 45.23% | 54.77% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 206 | 50.97% | 49.03% |
| Temperate Japonica | 335 | 71.04% | 28.96% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217928135 | C->T | LOC_Os12g30020(LOC_Os12g30020.1) | INTRON |
| sf1217928135 | C->T | LOC_Os12g30020(LOC_Os12g30020.2) | INTRON |