Detailed information of SNP:
|
SNP ID:
sf1217939135(Gbrowse)
Chromosome: chr12 Position: 17939135 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 84.76% | 15.24% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 496 | 62.70% | 37.30% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 70.96% | 29.04% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217939135 | C->T | LOC_Os12g30030(LOC_Os12g30030.2) | SNPs that introduce initiation codons |
| sf1217939135 | C->T | LOC_Os12g30030(LOC_Os12g30030.1) | SNPs that introduce initiation codons |